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Molecular biology

Heat-shock transformation of E. coli

Introduce plasmid DNA or a ligation into chemically competent E. coli and select transformants on antibiotic plates.

Total time1.5 h + overnight
Hands-on20 min
LevelBasic
Steps7
0 of 7 steps done

Before you start

  • Pre-warm selective plates to room temperature/37 °C and set the water bath to exactly 42 °C.

Reagents and materials

Totals are for 4 transformations (+10% extra). Per-transformation amounts are in the middle column.

ReagentPer transformationTotal
Chemically competent cells50 µL50 µL
Plasmid DNA (1–100 ng) or ligation (≤ 10% of cell volume)2 µL2 µL
SOC medium250 µL250 µL
Selective LB agar plate1 each1 each

Buffers and recipes

SOC medium per 1 L

Tryptone20 g
Yeast extract5 g
NaCl0.584 g (10 mM)
KCl0.186 g (2.5 mM)
After autoclaving: 1 M MgCl₂ + 1 M MgSO₄ (10 mM each)10 mL each
After autoclaving: 1 M glucose, filter-sterilised (20 mM)20 mL

SOB is SOC without glucose.

Equipment

  • 42 °C water bath
  • Ice
  • 37 °C shaking incubator
  • Spreader or glass beads

Procedure

Tick steps as you go (saved in this browser). Steps with a clock have a built-in timer.

  1. Thaw cells on ice

    Thaw competent cells on ice (about 10 min). Do not warm by hand.

  2. Add DNA

    Add DNA, flick gently to mix (no pipetting up and down) and keep on ice for 30 min.

  3. Heat shock

    Place tubes at 42 °C for 30–45 s exactly (per the cells’ instructions).

  4. Back on ice

    Return to ice for 2 min.

  5. Recover

    Add 250–950 µL SOC and shake at 37 °C for 1 h.

  6. Plate

    Spread 50–200 µL on selective plates (for ligations, also plate a concentrated pellet).

  7. Incubate

    Incubate inverted at 37 °C overnight (16–18 h).

Critical points

  • Controls: uncut vector (efficiency), no DNA (contamination/antibiotic check) and vector-only ligation (background).
  • Recovery can be shortened for ampicillin selection, but is needed for kanamycin and others.

Troubleshooting

ProblemWhat to check or change
No coloniesCheck competent-cell efficiency with a control plasmid, antibiotic choice and concentration, heat-shock timing.
Lawn or many satellitesOld ampicillin plates or too long incubation; use fresh plates or carbenicillin.

Safety

BSL-1 for lab E. coli strains; decontaminate cultures before disposal.

Further reading

  • Green MR, Sambrook J. Molecular Cloning (4th edition): transformation of E. coli.

This is a general starting-point protocol written for SolvesEverything. Follow your institution’s approved protocols, safety rules and manufacturers’ instructions, and optimise for your system. Spotted an error? Tell us.